Package: nparACT 0.8

nparACT: Non-Parametric Measures of Actigraphy Data

Computes interdaily stability (IS), intradaily variability (IV) & the relative amplitude (RA) from actigraphy data as described in Blume et al. (2016) <doi:10.1016/j.mex.2016.05.006> and van Someren et al. (1999) <doi:10.3109/07420529908998724>. Additionally, it also computes L5 (i.e. the 5 hours with lowest average actigraphy amplitude) and M10 (the 10 hours with highest average amplitude) as well as the respective start times. The flex versions will also compute the L-value for a user-defined number of minutes. IS describes the strength of coupling of a rhythm to supposedly stable zeitgebers. It varies between 0 (Gaussian Noise) and 1 for perfect IS. IV describes the fragmentation of a rhythm, i.e. the frequency and extent of transitions between rest and activity. It is near 0 for a perfect sine wave, about 2 for Gaussian noise and may be even higher when a definite ultradian period of about 2 hrs is present. RA is the relative amplitude of a rhythm. Note that to obtain reliable results, actigraphy data should cover a reasonable number of days.

Authors:Christine Blume <[email protected]> Nayantara Santhi <[email protected]> Manuel Schabus <[email protected]>

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nparACT.pdf |nparACT.html
nparACT/json (API)

# Install 'nparACT' in R:
install.packages('nparACT', repos = c('https://christineblume.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

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On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.08 score 3 stars 8 scripts 261 downloads 4 mentions 8 exports 31 dependencies

Last updated 7 years agofrom:aaa2590495. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winOKNov 18 2024
R-4.5-linuxOKNov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:nparACT_auxfunctions1nparACT_auxfunctions2nparACT_basenparACT_base_loopnparACT_flexnparACT_flex_loopnparACT_ISIVfunctionsnparACT_RAfunctions

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalesstringistringrtibbleutf8vctrsviridisLitewithrzoo